Week 5.1 - Compact Notation Derivation for a simple Mechanism
Objective : To derive the reaction rate of ODEs & production rate of each species for the given simple reaction mechanism
Reaction Mechanism :
CO+ O2 ⇌ CO2 + O
O + H2O ⇌ OH + OH
CO + OH ⇌ CO2 + H
H + O2 ⇌ OH + O
For determining the rate of reaction , we need to compute forward and backward reaction coefficients which are denoted by kf and kr.The positive and negative sign depends on whether the species are on reactants side or products side.
d[CO]/dt = -kf1[CO][O2] + kr1[CO2][O] - kf3[CO][OH] + kr3[CO2][O]
d[O2]/dt = -kf1[CO][O2] + kr1[CO2][O] - kf4[H][O2] + kr4[OH][O]
d[CO2]/dt = kf1[CO][O2] - kr1[CO2][O] + kf3[CO][OH] - kr3[CO2][H]
d[O]/dt = kf1[CO][O2] - kr1[CO2][O] -kf2[O][H2O] + kr2[OH][OH] + kf4[H][O2] - kr4[OH][O]
d[H2O]/dt = -kf2[O][H2O] + kr2[OH][OH]
d[OH]/dt = 2(kf2[O][H2O] - kr2[OH][OH]) - kf3[CO][OH] + kr3[CO2][H] + kf4[H][O2] - kr4[OH][O]
d[H]/dt = kf3[CO][OH] - kr3[CO2][H] - kf4[H][O2] + kr4[OH][O]
The above equation are a system of coupled ODE's. Compact notation is used for describing ODE system of equations to computer program.
Species index (j)
| j | Species |
| 1 | CO |
| 2 | O2 |
| 3 | CO2 |
| 4 | O |
| 5 | H2O |
| 6 | OH |
| 7 | H |
Reaction index (i)
| i | Reaction |
| 1 | CO+ O2 ⇌ CO2 + O |
| 2 | O + H2O ⇌ OH + OH |
| 3 | CO + OH ⇌ CO2 + H |
| 4 | H + O2 ⇌ OH + O |
We need stoichiometric coefficients for reactants and products.
Number of rows in the matrix is equal to number of reactions.
Number of columns in the matrix is equal to number of species.
Stoichiometric coefficient matrix of reactants

Stoichiometric coefficient matrix of products



Net reaction rate (qi) for each reaction

Where,
kfi is the forward reaction rate
kri is the reverse reaction rate
[Xj] is the Concentration of species
Net reaction rate for 1st reaction
q1 = kf1.[CO].[O2] - kr1.[CO2].[O]
Net reaction rate for 2nd reaction
q2 = kf2.[O].[H2O] - kr2.[OH]2
Net reaction rate for 3rd reaction
q3 = kf3.[CO].[OH] - kr3.[CO2].[H]
Net reaction rate for 4th reaction
q4 = kf4.[O2].[H] - kr4.[O].[OH]
Net production rate for each species

where, L is the number of reactions
ω1 = v11.q1 + v12.q2 + v13.q3 + v14.q4
ω1 = -q1 - q3 = -kf1[CO][O2] + kr1[CO2][O] - kf3[CO][OH] + kr3[CO2][O] = d[CO]/dt
ω2 = v21.q1 + v22.q2 + v23.q3 + v24.q4
ω2 = -q1 - q4 = d[O2]/dt = -kf1[CO][O2] + kr1[CO2][O] - kf4[H][O2] + kr4[OH][O]
ω3 = v31.q1 + v32.q2 + v33.q3 + v34.q4
ω3 = q1 + q3 = d[CO2]/dt = kf1[CO][O2] - kr1[CO2][O] + kf3[CO][OH] - kr3[CO2][H]
ω4 = v41.q1 + v42.q2 + v43.q3 + v44.q4
ω4 = = q1 - q2 + q4 = d[O]/dt = kf1[CO][O2] - kr1[CO2][O] -kf2[O][H2O] + kr2[OH][OH] + kf4[H][O2] - kr4[OH][O]
ω5 = v51.q1 + v52.q2 + v53.q3 + v54.q4
ω5 = = -q2 = d[H2O]/dt = -kf2[O][H2O] + kr2[OH][OH]
ω6 = v61.q1 + v62.q2 + v63.q3 + v64.q4
ω6 = 2q2 - q3 + q4 = d[OH]/dt = 2(kf2[O][H2O] - kr2[OH][OH]) - kf3[CO][OH] + kr3[CO2][H] + kf4[H][O2] - kr4[OH][O]
ω7 = v71.q1 + v72.q2 + v73.q3 + v74.q4
ω7 = = q3 - q4 = d[H]/dt = kf3[CO][OH] - kr3[CO2][H] - kf4[H][O2] + kr4[OH][O]

From the above equation and analysis, the reaction rate of ODEs & production rate of each species for the given simple reaction mechanism are determined.